Whole genome sequencing of bacterial genomes – tools and applications

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  • Module 1
    • Welcome and introduction to typing of bacteria and use of Whole genome sequencing applied to surveillance of bacterial pathogens and antimicrobial resistance
  • Module 2
    • Introduction to Next Generation sequencing
  • Module 3
    • Whole genome sequencing tools- demonstration of analysis tools for species identification, MLST typing and finding resistance genes
  • Module 4
    • Whole genome sequencing tools- demonstration of analysis tools for Serotyping of Salmonella and Escherichia coli strains , and finding plasmid replicons
  • Module 5
    • Whole genome sequencing tools- demonstration of analysis tools for multiple analyzes, phylogenetic tree building and finding genetic markers from self-made databases and Summative Tutorial exercise

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