Introduction to Dynamical Models in Biology
Week 1 :
- L1: Introduction to mathematical modeling in biology
- L2: How to start modeling?
- L3: Basic concepts of modeling using ODEs: Modeling the spread of infectious disease
- L4: Basic concepts of modeling using ODEs: Modeling population growth
- L5: Numerical solution of ODE-based models - I
- L6: Numerical solution of ODE-based models - II
- L1: Simulating ODE-based models: Introduction to JSim
- L2: Simulating ODE-based models: Examples of simulation in JSim
- L3: Steady state and stability analysis: Understanding steady state
- L4: Steady state and stability analysis: Stability of steady states
- L5: Phase plane analysis - I
- L6: Phase plane analysis - II
- L1: Concepts of bifurcation
- L2: Bifurcation in Biological systems
- L3: Modeling molecular processes in cell
- L4: Modeling molecular processes-I: Ligand-receptor binding
- L5: Modeling molecular processes-II: Enzymatic reaction
- L6: Modeling molecular processes-III: Transcription and translation
- L1: Modeling a signal transduction circuit: Negative feedback
- L2: Modeling a signal transduction circuit: Positive feedback
- L3: Modeling a signal transduction circuit: Incoherent feedforward
- L4: Modeling transcriptional circuits – I
- L5: Modeling transcriptional circuits - II
- L6: Online resources for mathematical modeling in biology