Introduction to Dynamical Models in Biology

Por: Swayam . en: , ,

Week 1 :
  1. L1: Introduction to mathematical modeling in biology
  2. L2: How to start modeling?
  3. L3: Basic concepts of modeling using ODEs: Modeling the spread of infectious disease
  4. L4: Basic concepts of modeling using ODEs: Modeling population growth
  5. L5: Numerical solution of ODE-based models - I
  6. L6: Numerical solution of ODE-based models - II
Week 2 :
  1. L1: Simulating ODE-based models: Introduction to JSim
  2. L2: Simulating ODE-based models: Examples of simulation in JSim
  3. L3: Steady state and stability analysis: Understanding steady state
  4. L4: Steady state and stability analysis: Stability of steady states
  5. L5: Phase plane analysis - I
  6. L6: Phase plane analysis - II
Week 3 :
  1. L1: Concepts of bifurcation
  2. L2: Bifurcation in Biological systems
  3. L3: Modeling molecular processes in cell
  4. L4: Modeling molecular processes-I: Ligand-receptor binding
  5. L5: Modeling molecular processes-II: Enzymatic reaction
  6. L6: Modeling molecular processes-III: Transcription and translation
Week 4 :
  1. L1: Modeling a signal transduction circuit: Negative feedback
  2. L2: Modeling a signal transduction circuit: Positive feedback
  3. L3: Modeling a signal transduction circuit: Incoherent feedforward
  4. L4: Modeling transcriptional circuits – I
  5. L5: Modeling transcriptional circuits - II
  6. L6: Online resources for mathematical modeling in biology

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