Extreme Geological Events
Syllabus
- Module 1
- Welcome and introduction to typing of bacteria and use of Whole genome sequencing applied to surveillance of bacterial pathogens and antimicrobial resistance
- Module 2
- Introduction to Next Generation sequencing
- Module 3
- Whole genome sequencing tools- demonstration of analysis tools for species identification, MLST typing and finding resistance genes
- Module 4
- Whole genome sequencing tools- demonstration of analysis tools for Serotyping of Salmonella and Escherichia coli strains , and finding plasmid replicons
- Module 5
- Whole genome sequencing tools- demonstration of analysis tools for multiple analyzes, phylogenetic tree building and finding genetic markers from self-made databases and Summative Tutorial exercise
