Bioconductor for Genomic Data Science
- Week One
- The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
- Week Two
- In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
- Week Three
- In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
- Week Four
- In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi