Bioconductor for Genomic Data Science

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  • Week One
    • The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
  • Week Two
    • In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
  • Week Three
    • In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
  • Week Four
    • In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi