Advanced Reproducibility in Cancer Informatics

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  • Getting started in this course
    • This section describes the rationale and context for this course as well as its target audience.
  • Defining Reproducibility
    • This section defines reproducibility for the purposes of this course.
  • Version control with GitHub
    • This section discusses how to get started with creating branches and pull requests on GitHub.
  • Code review - as an author
    • In this section we discuss the responsibility of an author of a pull request in code review.
  • Code review -- as a reviewer
    • In this section we discuss the responsibility of a reviewer of a pull request in code review.
  • Launching Docker
    • This section walks through how to get started with Docker.
  • Modifying a Docker image
    • This section describes how to modify an existing Docker image
  • Automation as a reproducibility tool
    • This section describes the motivation for using automation tools to enhance reproducibility.

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